SwissBIAS Annual Meeting 2024

Morning Session

Starts at	Who	What
10:30	Mallory Wittwer, EPFL	The Image Analysis Field Guide
10:55	Romain Guiet, EPFL	BIOP-desktop , a versioned computer to focus on image analysis not on installation
11:20	Guillaume Witz, University of Bern	napari-skimage: a simple plugin for teaching with napari
11:45	Benjamin Graedel, University of Bern	Tracking and Quantifying Spatiotemporal Correlations in Cellular Signaling
12:10	Benjamin Gallusser, EPFL	Trackastra -Tracking by Association with Transformers
12:30	Lunch	—

Afternoon Session

Starts at	Who	What
14:30	Joel Lüthi, BioVisionCenter	Fractal: An open-source framework for reproducible bioimage analysis at scale using OME-Zarrs
14:55	Albert Dominguez Mantes, EPFL	Spotiflow: subpixel-accurate and efficient spot detection in fluorescence microscopy
15:20	Alex Landolt, University of Bern	Autonomous Discovery of Mechanistic Models using Automated Microscopy
15:45	Sébastien Piluso, EPFL	Unlocking the entire mouse brain in silico modelling using image registration

Open-Source Software Lounge (OSSL)

• Joel Luethi, BioVisionCenter - Fractal: An open-source framework for reproducible bioimage analysis at scale using OME-Zarrs
• Mallory Wittwer, EPFL - The Image Analysis Field Guide
• Romain Guiet, EPFL - BIOP-desktop , a versioned computer to focus on image analysis not on installation.
• Romain Guiet, EPFL - coLoↄ: A Collaborative Board Game for Teaching Co-Localization Analysis
• Daniel Sage, EPFL - SAMJ — Segment-Anything Annotation on Fiji
• Loic Sauteur, University of Basel - EfficientV2 UNet for histological image segmentation
• Florian Aymanns, EPFL - SplineBox
• Roman Schwob, University of Bern - Testing AI-assisted, interactive Image Segmentation Tools
• Yannick Blum, University of Basel - Exploring 3D organoid screening data in Napari.

Workshops

• Nicolas Chiarrutini, EPFL - Image registration
• Kein Yamauchi, Joel Lüthi, Guillaume Witz, Florian Aymanns, … - python development